NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007827_10016088

Scaffold Ga0007827_10016088


Overview

Basic Information
Taxon OID3300004777 Open in IMG/M
Scaffold IDGa0007827_10016088 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1855
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045530Metagenome / Metatranscriptome152Y
F061527Metagenome / Metatranscriptome131N
F075720Metagenome / Metatranscriptome118N
F100357Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0007827_100160881F045530N/AMIKSITEKLEFLNSMEELYQKVQEMLHYLGIKSPSKPNFNYYSELIKRRKQDLAFARWMVQRQHKEGLTSYMRKPGLIKMYKKKEQIEKVYKKATTEEGAHGYVDEEGLPRKRFSGIYTRQKIQLN*
Ga0007827_100160882F100357N/AMDPHSVKLLQNRIMLKFFTAKLKFVDTNCILCKKIIDTIAIERTKETQEMNLDLLEEKTKALHVRLIIKRQTLIAGLKLWYQMPIKIYNEEELLRVKRVIKSVIKLTRRAEEMLKREVIPV*
Ga0007827_100160883F075720GAGMVNQEDRNFKLFIGGLEMVLGLTKTAITILEYNLSGVVGLFFGIEQWSIVISFYITAHERSLVRHKDTVTEQGAKLANHLTIPLIKNMETLRDMCREGRSVETLNKLKAFESHLTYLIQKPRDQWTQWQVKEHIYSVIESEFPKIIQKLQSSILDHSWELINGICPSLLS*
Ga0007827_100160884F061527N/AMNSYFEQAFSEILSAIKELTIKIGTAIRIEQQKMPADPSILTVHHYHRVIRTKIDQLSSRAAIMSFKTDQYCLIKVYGTLLIMVNRALGESNHKSKYVQLKLLHRMLEEFENNSTFSYWKDHVILGDRAVRETDG*
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