Scaffold Ga0007827

Basic Information
Taxon OID	3300004777 Open in IMG/M
Scaffold ID	Ga0007827_10010561 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004777 Open in IMG/M

Scaffold ID

Ga0007827_10010561 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2349
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2349

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026798	Metagenome / Metatranscriptome	196	N
F043767	Metagenome / Metatranscriptome	155	N
F045533	Metagenome / Metatranscriptome	152	N
F073066	Metagenome / Metatranscriptome	120	N
F085120	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007827_100105611	F073066	AGG	MEEDLRKIHLENLLNTLEDSDKDKKIEICNIMKEMVEEETVKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0007827_100105612	F085120	N/A	MKNQARIIQLLNRLENMLKVEIEKARADQDKDAIKLLAKLRNLIKKIEVNYLAQKH*
Ga0007827_100105614	F026798	N/A	MDKSKEKLISHNYTEESSKSKREDNVNINKAIDENNQLIAIEKLAIRRGIERVNRRRDSQQAKIIRLVNSLDVKQNFQDMNNQLKLQILFNTVLKLKRVYPSKSAMWKAPNNNTLPPYKSVRLENKLLKRGLRKKCSSYPNKEKIIENWYKLMKVQENP*
Ga0007827_100105615	F043767	N/A	MENQEQGQSNGHSLFFSRHPSEANAYRRKRLWREKALEALDLLNHIKLEEIATSEHNIQVYEAIRERLKMLKMIDPERKIHQDTLVETTVIKYDCPMCLPTDDSNYEIELDS*
Ga0007827_100105617	F045533	N/A	EKEELVYRLLCLINLAFSQVGKRNEDYLVLQQIHETKLKITKIDPSWSFYDSNDYLIDKILRYINAINSNKEWNHEDNIKLFTEVRRNMIVLKEHNAYWFIDKNSIESHNPFLCHGCRKLKEEK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0007827_10010561

Overview

Ecosystem & Geography

Associated Families

Sequences