Scaffold Ga0007794_10010436

Overview

Basic Information

• Taxon OID: 3300004774
• Scaffold ID: Ga0007794_10010436
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2774
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010754	Metagenome	299	Y
F039040	Metagenome / Metatranscriptome	164	Y
F049487	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007794_100104361	F049487	GGAG	MPRRKKKFMLLRSWSGNFIVVERRWYDYTGIARQRGNAKRWWIVAESNDCGAMQAMASLTDKHLKMEVNHTYEEE
Ga0007794_100104364	F010754	AGG	MSNFDWKECVDCGDEIHIERWQLGYKRCLFCGEDQAIAERASWCVIQEYTKGNYQLVTPTSAFTTLKQTNPKENRA*
Ga0007794_100104368	F039040	AGAAGG	MSQVITVGQYDQSILDQAEIALVDGVSKTGDLIKGYSNALDQVFDVKDSNGRIITKWYDLKGKDKKGIKARRASFVQRMIAKGYTKGVDKDGNPKASATVDTYWQRVKEASGYVPKGRVSGGTDVDSKTVAELKTMINRILKAEEDGQDPEASQYKSALMEVYEGLGGDLDTLG*