Scaffold Ga0007794_10005551

Overview

Basic Information

• Taxon OID: 3300004774
• Scaffold ID: Ga0007794_10005551
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3815
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F012016	Metagenome	284	Y
F014840	Metagenome	259	Y
F029418	Metagenome	188	Y
F033405	Metagenome	177	Y
F061801	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007794_100055511	F033405	GAGG	MATNPKVKTDEELIALVNQYMEKHPSATRNQIVLHSTGSQGRVRDLDKRGLIKLPKALPRGTGSGWGK
Ga0007794_1000555114	F061801	AGGAG	MKTKPIFRASSSASYKGYDREIYLSEYTPINKEHYRRLRFCAVVSLGINLFLLIVMVMR*
Ga0007794_1000555115	F029418	N/A	FEEDLIEVAVAEYYQWVEVHQATRSEWNARMFYDAMRLGVIRGINYATSQYMQSLKNFEEKKNENKTDI*
Ga0007794_100055512	F014840	GAG	MIPFSHAVIDDEGEVIRKYRWSVKEAKWFTENNPSVKVIRLEQEPKQTATQIQQELFNLVGEAKY*
Ga0007794_100055515	F006587	AGGAGG	VDKKYEGTGYIIVGLIVGAVLTWAVMEATHTQKKYKMNLKCVQGELYEEIKPSMFVRSHLECFEQRSY*
Ga0007794_100055517	F012016	AGG	MQETLKQPYAWATEEYNINGELVWSSITQFRPKELSWIRDLPTKKHHIVITPLYKDEVNAEKITGIKSYKESTKKLAEAYGGL*