Scaffold Ga0007794_10000705

Overview

Basic Information

• Taxon OID: 3300004774
• Scaffold ID: Ga0007794_10000705
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10232
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006696	Metagenome	366	Y
F024973	Metagenome / Metatranscriptome	203	Y
F088507	Metagenome / Metatranscriptome	109	Y
F103126	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007794_1000070512	F088507	AGGA	MTECCNDFGNCTQGRDCPIRKQRAQEANEAFMNRNNGLEPDLIDDLAASVKGLIALMFVVAGLTMIAFAFWGK*
Ga0007794_1000070513	F006696	GGAG	MKFIKFLKDYYRDLTPAEVIARELAQAHLDRLEAESASEYAKACHDLSMARIERLNTRLKEYK*
Ga0007794_1000070514	F103126	GGAG	MSEQMQMQIDEVVEELSPIPGQIGILTAHELRSHLRMAVTKGSLIGWVGAERLTSARYKQDYDNLVQHCKQLELEIMELKR*
Ga0007794_100007056	F024973	GAG	MIWTLVLVTGINMNSILVVGYFEYEAACQKASQEWRNLGYKVGCVQTVKHK*