NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007791_10027428

Scaffold Ga0007791_10027428


Overview

Basic Information
Taxon OID3300004772 Open in IMG/M
Scaffold IDGa0007791_10027428 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1979
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008421Metagenome333Y
F066769Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0007791_100274282F066769AGAAGGMMMLDGIKFIVLPSLLWPFDPDTPTQWRDAFPSIIPDHYIQLDPQKTPQAICGNNRFSGEDPGYHSSPAGQQIIADNFYQHWITHFR*
Ga0007791_100274283F008421AGGAGMKLMVAGCSFSAVSKTLPGTAWSERLAQRLGWDLTNLARQGCSNGGIRIQIDEIRRQQPDFAVIGPTFWDRMEIPADSAPYDWSQAPSSGENPPLERHLQDRNRGNGYRREDGIRNVNYGREPSNMICETIFTLAENYDHPYRMGRITKQAQNGVRHWIDSIYDNAWKKQQDE*

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