Scaffold Ga0007791_10001336

Overview

Basic Information

• Taxon OID: 3300004772
• Scaffold ID: Ga0007791_10001336
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8818
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001299	Metagenome / Metatranscriptome	727	Y
F030377	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007791_100013364	F001299	N/A	MSQDQNKPEILDTSKVDYDYDYLRQDAGGIITTHNGVADRLLSKNDKLYNEMKGDWTRTGWNGNKNIKVTTGRQDGKFYITREQMNTELIKKRCAEYRQGAEAGMLDPLAPLMPDGSIGYKWMDLPDVIAIRISDQYFDGMPWAVLKNDRTLKAQFYRVVQREYAEYICYPGGKLPIPIDVAYPAKSGETKFFKGI*
Ga0007791_100013368	F030377	N/A	YMTAGHRSEILLGLLTATPRLGVKPDKVDFEMLQDGEAAIFILDPKFDPSTDVYPLPPPAGNLGFIDNAMTRMQSDTQAIIGMTTPQDVFNPEVMSAGNSGAKLQMALGPNQIIQDNAVRNSADGLKEAIWLVWRTLIHYGDDFSVKKLAAMYHPDGKPIFLDYQAWDDMNFCDRKLMHIELALGMMSEENQLQRQQIINQTQTQLYTQVSAMVAQGTLTPEMYKKIKKPFADTLYVLGVKDCDTYLPTDEEIMKMIEQGQKAQAGKEPTAAEKKDLSVAELNAAKATQVKAEIEGQDAESQLDFMAMAQGNPKVYN*