Scaffold Ga0007791_10001244

Overview

Basic Information

• Taxon OID: 3300004772
• Scaffold ID: Ga0007791_10001244
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9062
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (92.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002071	Metagenome / Metatranscriptome	596	Y
F003422	Metagenome / Metatranscriptome	487	Y
F005177	Metagenome / Metatranscriptome	409	Y
F011299	Metagenome / Metatranscriptome	292	Y
F013527	Metagenome / Metatranscriptome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007791_1000124411	F003422	N/A	MLVNVSSIVYNTRMTHYQKYTWICPSDCDALIEYTFKDGYGWPAGVMELTCRCGTDCILLSVEDATIPYTDSLLPTKEEKMEETTIGSDALHSPAVEYNPDLLVTYKVIHGYSDPEYTTSKVTSLEWDLHNARQAQKTNGVLTNKISLVKDIITEAYADSQDQDTLRDIAEALGIELTRTIEWSATIEVSGTMDIDILEDVDVEQEIYDNLYVESQNGQIEIGDIEVCNVREC*
Ga0007791_1000124412	F000311	GAG	MYFELTAPDRLSLEMAYWDAQIMGLDPEFMPPLTFNVGTGSIEKVSRIRDKYNLKESYWSDKEATGY*
Ga0007791_1000124413	F001043	AGGAG	MSDYKDGFDDGYKFAREEIMEKLSEIDIADIDSWILDRLSEMIEGGAL*
Ga0007791_1000124415	F000450	GGCGG	MGDRANFVFVQPNGHSIVLYGHWAGHNMLANLAEAAIKAQGRWSDPSYATRITISNMIGEGWAMETGWGLSVDEIQDNEHKIAVIDFAQQTFSLHEEVPHADASSKVRGMSNDAIFTQDLSNFCEKYSDSLVRV*
Ga0007791_1000124418	F001460	AGGAG	MLGYTKEDLDRMTNAVHDAKLFYLRTPSDLMDKEPLRKDLEDAVSFFQGLWAEGYFD*
Ga0007791_100012442	F013527	AGAAGG	MEIFEFNTFIDVEAESYDEAIDVFQFQLKYGINKDNVYVADIKQLTNNNESVEV*
Ga0007791_1000124424	F000852	GGA	MTTKREYLKQQGITVGVRGRFSGAAKVAIAEALSKGVTFTDPQPITKKAK*
Ga0007791_100012443	F011299	GAGG	MMTRKHFEAIAEILKFASDKTHPALFSKMVNDFALMCARENPNFDVNKFHEASGYHVPNFSSR*
Ga0007791_100012447	F002071	AGGA	MDTLEIGQTYTTSNSGVTGTIKAVDNHPSGVNRILLDVNGKERWTSAPAI*
Ga0007791_100012449	F005177	AGGA	MRYRVEIYDDIKANDLTIQSPTLVDKEYLTELVFSNLNKFSGNVKAFVYDNVKKKKVTALVLPYETVSKINNKRAQLTNVMV*