Scaffold Ga0007791_10000075

Overview

Basic Information

• Taxon OID: 3300004772
• Scaffold ID: Ga0007791_10000075
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23792
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (71.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F003112	Metagenome / Metatranscriptome	506	N
F003304	Metagenome	494	N
F004760	Metagenome / Metatranscriptome	424	N
F025460	Metagenome	201	N
F030376	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007791_1000007514	F030376	GAG	MKAITMITLTAMLMASVMAEDDDADAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYFKSGSSIVGKDETFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDND*
Ga0007791_1000007517	F025460	AGGAG	MAVLDVPELMNMFRQDELQKQAVADAQRKQALEERAMALKEQPDVDFSFEKGGLKVKGKLKDLPALSQDPAFAPYLAGIGSTISNQNSLDNEEIQAQRDAINERLRKLSADKLKQEIEMAKGDKRTFAMEAGLGLVGAKPRADVLKDIEAESGVYKNKLAELGFNRQAGQMETNVPDYQSEAMPLQATPQATPRVAPETPAQAPAQPEAPKNFNSLQEAKAAGVKPGQLIYINGKPGRLQARQ*
Ga0007791_1000007522	F000635	GAG	MTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTTRLITLGSNVETPLSVAYNDAEVDPIDLATIISQDPGLLSDDRTGDPDTYHFTGRNSNGVAELNLYPRLKTAGTTPLRVVEKLKCLTRTNIIVDFPPSQAALDDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANADLALMANYELSQVGGVKQITPQSLGELTIEEMFSA*
Ga0007791_1000007527	F003112	GAG	MTRSEYACFKEALKFAVENNNMVKETKYIGKVKHLLSVNRSIKRIVEEGRDRDEVVDAVVHLAVALKYLEGRGRES*
Ga0007791_1000007532	F004760	N/A	MPIYQYEDSRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLLKGYYRQEQKLGSRFKSKYTPDSIKRAALRRK*
Ga0007791_100000755	F003304	GGAGG	MKQALVTQSFGEDWKKIIDLTRPRMEAYCKRHNTDFILIDKPLTHPSQYSKSAIGNIIATKGYEQVTFVDADVLIAADCPKLSDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLTRLSNQIEADEAKLVELGR*