Scaffold Ga0007791_10000038

Overview

Basic Information

• Taxon OID: 3300004772
• Scaffold ID: Ga0007791_10000038
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28718
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (94.64%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009319	Metagenome	319	Y
F051645	Metagenome	143	Y
F054521	Metagenome	139	Y
F061482	Metagenome	131	Y
F066497	Metagenome	126	N
F078138	Metagenome	116	N
F091218	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007791_1000003817	F066497	GGA	MNQAEYQDWKLHPITVEFFSHLKKAKQETMESWANRQFSTDGDNQFALGGIYAINQIIDLDYADIAGE*
Ga0007791_1000003834	F054521	AGG	MSEEQKPIKDFPMESAMMSDVVAMDVIGAMIQSDLAKNLEHPMSQITAIGFAFAKEFLKQREEWLKPKEEPKPTSTIVTE*
Ga0007791_1000003835	F091218	GGA	VDLFRTVFPKIKVLYAEEGQYRIGKKPDESKRVVPNTAYLDDKPTKKGNKK*
Ga0007791_1000003840	F051645	N/A	MNEDRFYTPLLYVVKKHGSLAGACRALGISHQRISHWNAKKSIPDAWKVVLHQKYDVPYKRFFEQLEN*
Ga0007791_1000003842	F061482	GGA	MGYDNWLQSGAYDNEDEEIYIEERVPELMKTEDYDPSDISHMAEAISEASADDQAIIRDYIEQKDWAKLGQKLYVMSYDYMEHFATSEAQREVSNGL*
Ga0007791_1000003847	F009319	GGAG	MIESIVKPQPLDNDVAVMKIIQLMGQLSLNDLAYILGLVAKVYIATEKAQEK*
Ga0007791_1000003850	F078138	GGGGG	VIPAMRNAHATHVDFGFLRGIISSNPNFMPSNIDMVLERKGQFLFGEWKREDEEIKTGQKILLKELAWIHRVILITGYVDTEPHISLIQEVLPTNGNLKVVGKSSADLIKYIQDWYKDAEENDDYLSLHC*