Scaffold Ga0007797_1007691

Overview

Basic Information

• Taxon OID: 3300004771
• Scaffold ID: Ga0007797_1007691
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2.5M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3091
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003027	Metagenome / Metatranscriptome	512	Y
F006543	Metagenome / Metatranscriptome	370	Y
F012108	Metagenome / Metatranscriptome	283	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007797_10076911	F003027	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARVAGFANVITEKNKIRAMILEAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADSDTLPDMWFY
Ga0007797_10076914	F006543	GGAG	MKKFTFAVDVVADELDRDSVVDSIRDCLSGSLPDDIHANVKAGEVKSFSEQGYKVWRARVTGVTAEQAGDAHDGKVEKESAEAVA*
Ga0007797_10076915	F012108	GGA	MIKIELSVRESLNMIANGCSLDMFDKIVCSLEVALGVNQRRRVTITAGMSTDNRIKCIKCIREHTGWGLKESKDWTDVIVGRYNESGFWTGGGHTNTMLLKTPEAAEALLRDLTSQGCEGYLA*