Scaffold Ga0007797_1005504

Overview

Basic Information

• Taxon OID: 3300004771
• Scaffold ID: Ga0007797_1005504
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2.5M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3673
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F008812	Metagenome / Metatranscriptome	327	Y
F057320	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007797_10055041	F000325	N/A	TENQYKNARVAGFANVITEKNKIRAMILEAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADSDTLPDMWFYTHIYDARLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKVAPKRPKSKAKAEAWRQALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH*
Ga0007797_10055042	F057320	AGGA	MSYVGLYDDAGSKNAFYIIKDKKIGRKRVGFKEFENKQEAEFAHRVQKHLAQFDLAPMVYGDVGMIRRHDGQLTCHGYLTEVARPMPNCNDPDCGECFESCCKNGAAISQVVYDLREHGLEYNDAHKGNFGYVRRRGSWIPVTIDVGVESFGEWDEDIYGQFDYDENEYDDSGCGCIICQQQGGC*
Ga0007797_10055044	F008812	GAGG	MIQWVGILIAVLGLAYNGVKDYQKGDIKLSRLPQKQVLTKPVYAIQYCLMAYDPNVDKVFYLHETGIWHDYAPQQRRYTTTPQPYQDQGATAVASSYGSQGTPPHRYGQSPQANTNPIR*