Scaffold Ga0007797_1004529

Overview

Basic Information

• Taxon OID: 3300004771
• Scaffold ID: Ga0007797_1004529
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2.5M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4017
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019099	Metagenome	231	Y
F065710	Metagenome / Metatranscriptome	127	Y
F085340	Metagenome	111	Y
F089785	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007797_10045291	F085340	AGAAGG	MNDFELMQYWRAVKQPQREVEQRVLEFGKAVYHQAYQDCRSELGHAFHSGRAMGQDDCKPVMQKALSAMESAYY
Ga0007797_10045292	F019099	GGA	MIINGKIVKDWDKSQISTGYIPPNRFRIITWDMGRFQSWLLGEKPLSRNLIEKVIR*
Ga0007797_10045293	F065710	GAGG	MIIKFKYKTKKPHRDQLSGMSPSQFKTMLKRKGYKVDRDFFKFGSVAYKNNRAYRFRYWSPRFFVDVSIPLKEFDRWANSVNITMDFVDWDLIV*
Ga0007797_10045295	F089785	N/A	VNPTVDQLLDLLLDGDPVAWQITRTPDGLSIVGVMKNGQTKHLATVPIAAPENDPDPYHVG*