Scaffold Ga0007745_1001350

Overview

Basic Information

• Taxon OID: 3300004765
• Scaffold ID: Ga0007745_1001350
• Source Dataset Name: Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1580
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013757	Metagenome / Metatranscriptome	268	Y
F032651	Metagenome / Metatranscriptome	179	Y
F044486	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007745_10013501	F013757	N/A	GNQMLTNCVAKAKLVFNKKLKSYKLVVAFNAHKTITTAGIVKYAFPTQAKCAYVSGDLLAENLAQELSTVLPSVYAQLRTNSVEFVE*
Ga0007745_10013502	F032651	AGGAG	MKVKVVNIEAAGYYTSEYASGSTVKVTLQRGKEIASCDEILIWEEEYAEDCFEEWMDCALAGEVGYTYTEGA*
Ga0007745_10013505	F044486	GGA	MLNNILKWAGCATVLAGALFTSLRIDPLNIYFLNAGALLYLIWAVRIKETNLIIVNGVLLALYVLGLFY*