Scaffold Ga0007754_1257033

Overview

Basic Information

• Taxon OID: 3300004764
• Scaffold ID: Ga0007754_1257033
• Source Dataset Name: Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 731
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis ganjiahuensis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F097454	Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007754_12570331	F097454	N/A	YMCSQDHNLFHDREAKEVVFMPGWSAFAESAEAAHAVEALGLVWPGTEPVASVTLEKIGFKRICEKVGAPTPPFVVLSEEEERVDLTNPAIKEKCVQKFMAGVASMKTDQPGLIKSIHGGGGKGTAHLPRPDDPEQARAAIEKVLNEMNRSDGIYFEQKVNTKGDGRFYQIELEVDGIEVANGGRFVWFNNRLQKVVEIGLSDDLVPKFMDEELYQKSRVWSAEIAKHANNNTRATMEALVFT