Scaffold Ga0007746_1044746

Overview

Basic Information

• Taxon OID: 3300004763
• Scaffold ID: Ga0007746_1044746
• Source Dataset Name: Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4032
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038245	Metagenome / Metatranscriptome	166	Y
F045760	Metagenome / Metatranscriptome	152	N
F070116	Metagenome / Metatranscriptome	123	N
F078719	Metagenome / Metatranscriptome	116	Y
F099303	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007746_10447461	F038245	N/A	MKIYFGNANDDMFGDGLFEANDNQYYYGVEHGTGPGGLDEVRLFDGCNRYLPVHVEAIPELIAALQEIQKIQQAVKQAQEMTERAESDITGYVYSSWNDEFEVDFDTE*
Ga0007746_10447462	F045760	GGAG	MASSGSKAKQAYAALYKSSTRWATNRKIKLTRLLKQQPNNEQIKDALANIKYRRHTPTTKTVWSHDNIRIAKLFKEFTGRASADLFSSNPKVQSGALAYRRDWDKVKVIEGRVNFSLGARAHDSKGNLIWK*
Ga0007746_10447463	F078719	AGG	MEVIEVYFLFALTTGITSCYVFLSPAVALARDQGIHNSFTENTWLSYLIYIIITTITAPFSVLPIFIPSFAERFKTGLERSVMESQT*
Ga0007746_10447464	F099303	N/A	MNFLEFTYTKADGTESKRAAIPLFGPTKFVEAIDVSQMPEDEFAVFCREFSALKSSQHEQTMAILAQFDLKHNYRKFNPEQMSDITTDYV*
Ga0007746_10447465	F070116	N/A	MSKFRTWDSQILTDAVKISLQIRTKIEEMCVAAHTPPDGLPNSLIPTDNLYSLVCAYEAAYNALIENDLIKTGNLKTDKNIH*