Scaffold Ga0065167_1008190

Overview

Basic Information

• Taxon OID: 3300004693
• Scaffold ID: Ga0065167_1008190
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA7.5M (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1613
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065167_10081901	F040590	N/A	MSGYGKIISGGARMTKGLTKGINDKLEEYAESHKMSATLANSVRKAFNQNPLSDPHLNNINVKATPKFTTPKLPAKI*
Ga0065167_10081902	F099270	AGG	MNTNFQYAQAPNRKGNVSKHTPSHSGGVTAVTAAKHGTATPKGSQGAPAANGNITGRHQKVMVSTHTDYCGTIKNDGYMDKSTKNYLG*
Ga0065167_10081906	F012670	GAGG	MFDEIRPEGSLVSSEKKLAASKARYAQKKAMKIATGELIPEIKPAIVGPSRTKSIVNRVTEYGALFNKLNEERIAKGLSPLKTAMEVLIDAMQSDEIDIKDKARIADKLAPFESSRAPIISIEHVQNISKDEEVSADEALDDFLMAIRKV*