Basic Information | |
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Taxon OID | 3300004692 Open in IMG/M |
Scaffold ID | Ga0065171_1010054 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (version 2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1508 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F023521 | Metagenome / Metatranscriptome | 209 | Y |
F064346 | Metagenome | 128 | Y |
F094831 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0065171_10100543 | F023521 | AGGAG | MKDAIIYAGYSRLADGTMKFRTATNEARVNQLVGFGEEVHMILINPVYSKSAAAKELLRLDHANGAQALEQFYTKFVRDENPFRVVKLKVPSVAMQQLVGAEIEEEPMTRKEAARLRAEWNRAHAHLSYDGE* |
Ga0065171_10100544 | F094831 | GGA | MHTCLMMVNKMPYVPQQLRSELFIAGFADIYNMLGNNPELRMIPIGQLDHMRARLKQLGYRFRVVFRGPHRKNRNTLKRNAWAFNVYFEGR* |
Ga0065171_10100545 | F064346 | AGGA | MSKYRKADYQTIVRNMPIQEIDSLFETFQNSNTRTALETEVMNILEAEIERR |
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