Scaffold Ga0065171_1004288

Overview

Basic Information

• Taxon OID: 3300004692
• Scaffold ID: Ga0065171_1004288
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2253
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009462	Metagenome / Metatranscriptome	317	Y
F018716	Metagenome / Metatranscriptome	233	Y
F024559	Metagenome / Metatranscriptome	205	Y
F063276	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065171_10042882	F063276	AGGA	MQNTSIRENLDFFSVVILGFALLAFAIYWNYTHPHMIVRYDCSISEISPDYPPEVKEGCRKLRAENILNKPK*
Ga0065171_10042883	F018716	AGG	MMDNIVTVVWDNQNGFWWNETCALVLEVFGLPGDRYESKPEHDYMSFTFKNKKDADLCKILLSERI*
Ga0065171_10042886	F024559	GGAGG	MTSALIKLIFGITLIVIAVVFGPLLGIWSLNTLFPVLAIPYTWQTWLAYFLLLGSLTGLRFGSKK*
Ga0065171_10042888	F009462	N/A	MELHESVRDTYTEQVIKEHGGFRLTLKKHEVLSPKGLFSIDMVQESLKDGEVTDSQVYNFFMTKDEMATLASALTA*