Scaffold Ga0065172_1005130

Overview

Basic Information

• Taxon OID: 3300004689
• Scaffold ID: Ga0065172_1005130
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE20Aug07 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 798
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037570	Metagenome / Metatranscriptome	167	N
F039941	Metagenome / Metatranscriptome	162	N
F057095	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065172_10051301	F039941	N/A	MDIETLALRLEEVRLSRLEVLEEKKVLAGELLAGSLRIELKRSIMENMSLLIQLDLTLNEAEILYESLIECRLLHARFRQQSS*
Ga0065172_10051302	F037570	N/A	MNIKKLDLLKIRNLKFRASQRQVIIDRLLKKKDLEKDLWKVSVKTLIILAKIKVRCEELERISENLQQTIINGY*
Ga0065172_10051303	F057095	N/A	IDDLIKKESYPLQEVITFHNKKCKILKSKDIATLEKVEIANKLLIKTLSEETRNALKEQLALVSKVGSTFTNLSLMYTYIEENDSALQSETKK*