Scaffold Ga0065174_1031483

Overview

Basic Information

• Taxon OID: 3300004687
• Scaffold ID: Ga0065174_1031483
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul08 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1003
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011997	Metagenome / Metatranscriptome	284	Y
F031355	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065174_10314831	F031355	N/A	MIQEIQLTGLDNKPIKTTKKPPPRSINENLPPCYFTSIFIGSKGSGKTYSLIKLLKNYEKYPIYDNDRHKLDMRVIVFCPTIMSVANPIYNTLKYLDEDDIIMDYSDEKLLSKLDEIEKEKEEIEDYKKYVQVWNKFLKIEENVNLLLPDELLILSKYDFKEPKDIPHPPYKYPRVNFLVFDDLVGDANAFKRSHSAINN
Ga0065174_10314832	F011997	N/A	MTEKTVYGIDRAKFEGFGNYKLPIDDRVNEIIEATKKEYPNVDNYLLWLCAVDYVLEEKGLKKDNDEGVRMYDEYLKERKTFLYHSVKVEDDDLIKYDYNVLQEI*