Scaffold Ga0065173_1007462

Overview

Basic Information

• Taxon OID: 3300004686
• Scaffold ID: Ga0065173_1007462
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Oct08 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2030
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015302	Metagenome	255	Y
F030333	Metagenome	185	Y
F032569	Metagenome	179	Y
F034448	Metagenome	174	Y
F040990	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065173_10074621	F030333	AGG	MAVDRNPILTIPIKTYSHYTECEPWCQVNIGVWNAAWWRDFPDIAMSVVVEGPYEDCYWF
Ga0065173_10074622	F034448	N/A	MYVNNFSLPRPPKEVLARCQEVIVNDPAFRMWKMKEFCRENSLSLAWSELVDTTDVSAYFDEAAAFYFIDPADATLFRLKFK*
Ga0065173_10074623	F015302	GGTGG	MSQNDYYANTASRLDTIIGGDTSHFLRLQRVKNEYDTLADTVPVGQGFLTFYDYVKEYYGVKLVYDGDDLKLEYAVVDERKYTMFLLKFGR*
Ga0065173_10074624	F040990	N/A	MNYYYEIDPKYDGTVFGDKWRYWCMYNCSPADNGKMCFKTHDDFVARSTRVWLENANGVYMIKPTWDAKRHRVDKHEFTMVKLRARTIKWWHDEPE*
Ga0065173_10074626	F032569	GAGG	MIRVNVLDPAFNTAYWNAKRTLPVEHLELPRQYGQRWREAFRCRVDSKSPPGEYYYIFDNDADYTWFMLRWG*