Scaffold Ga0065173_1000104

Overview

Basic Information

• Taxon OID: 3300004686
• Scaffold ID: Ga0065173_1000104
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Oct08 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13170
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020485	Metagenome	223	Y
F035995	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065173_100010425	F035995	GAG	VSVVTPAQIEARLKDLSKLIDEAHDDLVDAEAAYHQNKAYYEVAMANSRMGLAQISSPTGRNYTVQEREDIALLDNKDAHMALAKSEASVKANRANVARLRVQVDIARSIGTSVRTGMDAS*
Ga0065173_100010426	F020485	GGA	MKLICKHKQHWEINNGKLILGADTDEFLAEQLTKMTARLEAEIRLDIYDQICALDFTNNRKVIVKSGIENVALQVQDMCAQIALGEAK*