Scaffold Ga0065177_1000194

Overview

Basic Information

• Taxon OID: 3300004685
• Scaffold ID: Ga0065177_1000194
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9878
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023521	Metagenome / Metatranscriptome	209	Y
F059640	Metagenome / Metatranscriptome	133	Y
F064346	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065177_10001945	F023521	AGGAG	MKDPIIYAGYSRLADGTIKFRTATNEARVNQLVSFGEEVYVILISPVYSKSAAAKELLRLDHANGAKELEQFYSRQVRDENPFRVVKLKVPSVAMQELTGAKIEEEPMTCKEAARLRAEWNRKHAHLSYDGE*
Ga0065177_10001946	F064346	N/A	MMENNMSKYRKTDYQSIVRNMPIQEIEGLFETFQNSTTRTALETEIMNILEAEIERRIANWEVAYV*
Ga0065177_10001949	F059640	AGGAG	MKSMYSYLGYEYCPWDDVEEDNIKIFHECYKDGVRVKMPEAFYCHSPYDLVPFEKFVKYVQSIEVFIQG*