Scaffold Ga0065177_1000190

Overview

Basic Information

• Taxon OID: 3300004685
• Scaffold ID: Ga0065177_1000190
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9963
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006053	Metagenome	382	Y
F011824	Metagenome	286	Y
F104705	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065177_100019010	F104705	AGGAG	MTRKHFVAMAQEIAQMPDRESARIAAEAFAAVARTVNSRFDTERFLTACGV*
Ga0065177_100019017	F011824	N/A	MTVPIFKNGDALYTVILRESDARNRLVKWSTSSRSIQARVDENKMHIYDHNTLSLFIVTWTHGWDNVTVWDPWLKRHITI*
Ga0065177_10001906	F006053	AGGAG	MKVKKLIAKLYRAEIEHNMAQAKKFWLKLLKKSLKGKHTEAVK*