Scaffold Ga0065177_1000174

Overview

Basic Information

• Taxon OID: 3300004685
• Scaffold ID: Ga0065177_1000174
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10423
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F012670	Metagenome / Metatranscriptome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065177_100017413	F012670	GAGG	VFDQPIRPEGSQVSKEEAKEKARAAYRAKKAEKKALAIASGERQPRGGFAEGVVTNPKGRPKSIVNRVTEYGALFNKLNEERVSKGLAPLKTAMEVLIDAMQSDELDIKDKARIADKLAPFESSRAPVISIEHVQNVSREEETDADEALDDFIESLRKV*
Ga0065177_100017414	F001915	GAGG	MEWTLAHPLHDVEDIVSLADMNYGSEIDGILKRDRNVFRHRVTVATTEQIFNKSREFIAVCRDDPIVIPQYDMNQQVVGSYTERPLLGFCWFDRGGYTTYSNEEISNAKFHHIDLSLSPRTRVRLVNEMIDQHILWAHTYGIPIICSTSIRAEHNGFMKIHQKRGFTVNGSYAWIRTEEAMKCLINQ*
Ga0065177_10001742	F000857	GGAG	MGLNANNEEALVNEDYYTKGILEAGVDAVLRKNNKLFNEVKSGTWSQNFNTGNLKYKVGAIDGERYVQYEQMNVEAVREKCKQMREFYKEHGTDNPFFAGTFHAMDLPKCFVHEITSKWFNNRPWELIKQDKKDKILFYAIVNEYYSDFVCHPTGKIPLPYNPSIPTR*
Ga0065177_10001745	F003521	AGGA	MQSLVSNIRGFFNKRTRAIDSQKGASVERKTLAIENGEAASRLMKNNDFALMFNLYRFNMLDRLEESTTDLERISNAHFVAGVRDFIDYIEKMELLGKVALKRSDTQDEKE*
Ga0065177_10001749	F001059	AGGA	MATYDIEALKADLPTAKELSQFVYDKTGIALDLVGKPKEDQYLAAKNALEGKKVPSEFLTDENPYVEKKDLVPEDPMPSVPPREAGLLDPEAMVHHFGATNMPHPLDPQSDRKVHITFRKYEDGSLTFEVVGPLEKQAVGSRLNKYGQVQPEKYTWLDPRTGERLMRKADGSFTKEGRGMYAYCVGEKGGGIWPLIDKEAVRISEKNIANPWA*