Scaffold Ga0065177_1000080

Overview

Basic Information

• Taxon OID: 3300004685
• Scaffold ID: Ga0065177_1000080
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14554
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008677	Metagenome	329	Y
F015057	Metagenome	257	Y
F037029	Metagenome	168	Y
F074332	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065177_100008018	F015057	GGAGG	MNTIKILAETIDNLWFWTYGIVAGWGLTVTVVIVALVILTVRTINLQRRIDALESRLIHAERDYNLTVNNWKHR*
Ga0065177_10000803	F008677	GGA	LADSQNCENIYKDNMNIEKNQVYTFKLTNADEIVGKVVDITDATYIVAQPLSAVPTEKGLQLIYTVFTGDPNENATINKTAVAMICQTRAEVGDHYLEATTGLKPVRKTSIIMG*
Ga0065177_10000807	F074332	AGGAG	MAYEYLDKYSVEELQGYFSDFHKDFYGSRPRWGTPDEWRNRAWLVVNIDAIHTAMDRMKETYSGREQLRIQGWVVDEAEFNDIIDPEEYANWSADQDAVYYGA*
Ga0065177_10000809	F037029	GGAG	MIKKSFRHWCQEKWFDHKDELESYHQPLDHTAQQYFERYKYWLKREYRHQQND*