NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0062591_102037291

Scaffold Ga0062591_102037291


Overview

Basic Information
Taxon OID3300004643 Open in IMG/M
Scaffold IDGa0062591_102037291 Open in IMG/M
Source Dataset NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)593
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameWisconsin, United States
CoordinatesLat. (o)43.2958Long. (o)-89.3799Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038128Metagenome166Y
F047743Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0062591_1020372911F038128N/AMAPLGALSQAWTSAGASLQLGWRVSGLYRFDDLWIGLAEGPAFDDYASGSGLYAEHALRRLSD
Ga0062591_1020372912F047743N/ALAVPATALAEPGGPDGSNFQAHFYDCTGPAGTPTSFDAESQHRGAAWHLTDSRLVFNALIGFDETTNTLVVLTPGFELNAVEAVTCRSVRPDTGHVFLLTGVLS*

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