NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0066612_1017539

Scaffold Ga0066612_1017539


Overview

Basic Information
Taxon OID3300004642 Open in IMG/M
Scaffold IDGa0066612_1017539 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_10m_RNA (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5322
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074832Metagenome / Metatranscriptome119Y
F091886Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0066612_10175391F074832N/AMTKQDFLEGKSFSLDGDWSETTTYKYRGGSVEALEREYRMTNDIDNVLISDSIYNIDKIGNKMIHLYTFLLGKKIVDKIRYDDMVEYISQGELV*
Ga0066612_101753911F091886N/AMTKLQLIEVLERNLKVLKDTNIPDKIPVYHTIDTGGYSDQCCQIYHFDMGFSYDEDEGILFFEYFGDENPGTPGIPGKEI*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.