Scaffold Ga0066612_1012905

Overview

Basic Information

• Taxon OID: 3300004642
• Scaffold ID: Ga0066612_1012905
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_10m_RNA (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3015
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035837	Metagenome / Metatranscriptome	171	Y
F083269	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066612_101290512	F083269	AGGAGG	MSIKKVSVTKTSTFTVDGEGKVTRERIVELSHDWTEKDVILFKKIAKQGGICKIKGNKYTVIPGEKITTSKGWADAGVGKMPGPE*
Ga0066612_10129055	F035837	N/A	MKQIKDLKVGSIFQMKGLDMDGKIVHVDCTLRAYNGMNKYVVESDGISLLLDGEGTVTKTYN*