Scaffold Ga0066395_10130642

Overview

Basic Information

• Taxon OID: 3300004633
• Scaffold ID: Ga0066395_10130642
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1251
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005164	Metagenome / Metatranscriptome	410	Y
F006088	Metagenome / Metatranscriptome	382	Y
F008680	Metagenome / Metatranscriptome	329	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066395_101306421	F008680	N/A	VATAAEDCLSTTIWSGGAAAGLYLGTGLILACLVHTHYPGALGLREWIRVVLSW
Ga0066395_101306422	F005164	GGAG	MSATKFHVGDRVEDKKTHERGRVTFVYSTLEIRDEFIAVLFNGHDEALAVPADSVRKVSKRQS*
Ga0066395_101306423	F006088	GAGG	MSSEMVDCRRKADDARQGAAQASEPFVKSAYEKVAEHWMLLARLDSLIHDKTITNPPGKAGP*