Scaffold Ga0066395_10035283

Overview

Basic Information

• Taxon OID: 3300004633
• Scaffold ID: Ga0066395_10035283
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2117
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041617	Metagenome / Metatranscriptome	159	Y
F043100	Metagenome / Metatranscriptome	157	Y
F043579	Metagenome	156	Y
F045337	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066395_100352831	F045337	N/A	PDEISILEDALDDAWRRVEQSKAPWASEDYSTAGRAILAQHIVKMARDGERDPRWLADSALLYLSQQKLTRTPAEDL*
Ga0066395_100352833	F043100	N/A	MDAASLREKAALCLRIAKGLSWNNPSRLELTDLAERLDCEARDSELQNLAAEADNRTAAGARG*
Ga0066395_100352835	F043579	AGGGGG	MLKTITNNMFDIIASLIIIVAVFYLAAITHILPLPESALTRLNGFSSNVMEVLFACGSRVIRFFVD*
Ga0066395_100352837	F041617	GGGGG	MSRNLFALFGVVAVLLTATVALTLSRATLFAVGGMKCYSTAGIEKAC*