Scaffold Ga0066395_10003021

Overview

Basic Information

• Taxon OID: 3300004633
• Scaffold ID: Ga0066395_10003021
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5800
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014106	Metagenome / Metatranscriptome	265	Y
F024457	Metagenome / Metatranscriptome	205	Y
F105649	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066395_100030213	F014106	AGGAGG	MRTFILAWVIGLLGLIMIAGGIWGVIDLFRQEVRAPLKSYGVAVSMVCGGVAMLGMAQGLRLLLVLIVLAHH*
Ga0066395_100030215	F105649	N/A	MSYSSFARTNVAHFGLLLIAAVILASCTTNRTDTPTAQAAPEPLTQSKAAEQCWMETEHGAKSLPLDKRSKVVDQCVKDKMSGAK*
Ga0066395_100030218	F024457	N/A	MKTIRQSQLARAWSRRSRVGDIVIFDVLGAAPRGSGATEAAAREDVRRVAESLRALHEDFNGEAFLIVPG*