Scaffold Ga0066395

Basic Information
Taxon OID	3300004633 Open in IMG/M
Scaffold ID	Ga0066395_10000669 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12680
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12680

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Panama: Oeste

Coordinates

Lat. (^o)

9.1086

Long. (^o)

-79.8436

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053522	Metagenome / Metatranscriptome	141	N
F055216	Metagenome / Metatranscriptome	139	Y
F062199	Metagenome / Metatranscriptome	131	N
F079173	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066395_100006691	F062199	GGAG	MPALTQDNVLLWLHGRRLGLVGDGSFSASSGLMIDSQLVGSKRGPVVSQLAPGSNGVGNVAFPAAVDGDVVLFALDLTTPANVTSSFEVVISTAGQIRQTSGSNLSTKNIFFQIAPAS*
Ga0066395_1000066911	F055216	GGAGG	MPKVTLRPTILADLPHVIGEPLPYRIRTITAVVDDRVIGMGGIAFPPRGPAIAFVQLVRPASNHDGAACPDDGAAESIPEARRYPLAFHRAGLMAMEMIRTSEAGQVVATADAGSEVAVRWLKRLGFRPAGDQRIEGKVLFVWERGRDGWETSSRRSP*
Ga0066395_100006692	F079173	GGA	MHRYREFGLVSEQDEALRRAFRDGFKRAGLSFAQFLDALGWYRDHMRPGGDEGQLADAFAQFAADRRWPAEQRDGALDLYRAIRDNGPAAVMQIPRPDEDRATLARADELLRRDPARYWGDGELQDAAFEARERLHDFALAEDPPERPLKASPDRQRIDEIETLLRDPSGEGQRRYWTEAGLRTDYAQALARLHSNTAADSASAALSSTAPPDVDATQATA*
Ga0066395_100006693	F053522	AGGA	MTQATQPATRPTRKAPASARISTVLAETSKPALESDVAAQTPRPVAPIPQSAMQDAAFARNWWRVVIDGERTPYDSVLTDVAVWGPNEAKLRTGDIVEVLDEQSTLFALLYLVEHVPAKFIRFAELIKVPLGGVAVGQIEARGSHYAQWRGPAKRWCVIGPTGTVLRDSILTKEEAERDTTTRNTPTSTAFVSHPRM*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066395_10000669

Overview

Ecosystem & Geography

Associated Families

Sequences