NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066395_10000008

Scaffold Ga0066395_10000008


Overview

Basic Information
Taxon OID3300004633 Open in IMG/M
Scaffold IDGa0066395_10000008 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57118
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (82.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006432Metagenome / Metatranscriptome373Y
F027907Metagenome / Metatranscriptome193Y
F036797Metagenome / Metatranscriptome169Y
F045202Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0066395_1000000821F027907GGGGGMSHFAVGRVNKPFGKSSRPISGAYQIARLFVPSYEDGFSKDGISINITVRLNRNSDARRRLARLFESRRVVS*
Ga0066395_1000000851F036797GGAGMSNVDWQNRVSDLPRNPLPDRYKPRALHLDPVEDDDLPRPMKAPVVDLRKLERELGRRRLDEIAHVVRTLTYGEMIELATSMWNVKPDGTSLTEHSLPAVLHRWSTSRQS*
Ga0066395_1000000852F045202AGGMTIEPANVLVIDRTGDLPTFCALAYQDNDPSVVSWIDFWAVEPCSNVEGDYVRGQRYADEAIRHVRITGQPVFVECVLMFIGIKLRETDRRAGALEHGFMDRIADHFPRAMDNVLVRLARRYPKTLN*
Ga0066395_100000088F006432AGGCGGMTYSRASLLLALALALPLAVAGVAWAGGASLDEDEEDQSNAGVSFFGFAKDLDRGGGVADAKVSAEIKNRNASLVTRTDDQGHFKFSGFSKDIDPKDVEISCSKDGLKLQRTVRRQPPGGDAATSIEVDCLMVKP*
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