Scaffold Ga0058899_10129135

Overview

Basic Information

• Taxon OID: 3300004631
• Scaffold ID: Ga0058899_10129135
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1563
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.531427
  • Long. (^o): -72.189946

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000274	Metagenome / Metatranscriptome	1399	Y
F001527	Metagenome / Metatranscriptome	678	Y
F052816	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058899_101291351	F052816	N/A	ILARVERGSHIIMEQTCVGESVWVPKRIEIRATARILFLKSLDIQRTLTYTDYRPASDGPYSVSK*
Ga0058899_101291352	F001527	GGAG	MKISLADILNSHLKPLCSRDNHVMKYEAGRSRSNTAYQASYHCGFEGCSVRYDARDGYYMLIGMPDHANPVDEPGVNTTKCPKHGYWLYRRQNIDRETGVDWCCGVKDCDYPNAANTNTAELRTQ*
Ga0058899_101291354	F000274	GGAGG	MKVKISMLILALFLFAATAGLAGAQDTTKTTHKKARTLRGCLQKGDDANEYRLTTAKGATWEIKSDSVNLGEHVGHTVAITGVVSHAKMHGMKEDAKSEAKEHGVDKDSTEHGHMTVTNLSMVNESCQK*