Scaffold Ga0049105_1141574

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0049105_1141574

Scaffold Ga0049105_1141574

Overview

Basic Information
Taxon OID	3300004630 Open in IMG/M
Scaffold ID	Ga0049105_1141574 Open in IMG/M
Source Dataset Name	Worm MetaG Olavius vacuus BAHAMAS.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1570
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	Germany: Marburg
Coordinates	Lat. (^o)	50.8	Long. (^o)	8.81	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004447	Metagenome	437	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049105_11415742	F004447	N/A	SHQPAINPTEYSVSYLVELLHKSAVEHLTIYRQIEARDFGSLATFVTTDFEALYAYKHGDYQRCLQLSTQNVHTLLYAKTILDVLTFPAFTQLLDDDIVSLIALTLIVNPVCREIDDQYACITQLTLSLYLITQCQLKLYHSMTSLAQTLDYIEITQRRYSNTRSLDHLTLKLIERKVLAYLA*

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