Scaffold Ga0049105_1100967

Overview

Basic Information

• Taxon OID: 3300004630
• Scaffold ID: Ga0049105_1100967
• Source Dataset Name: Worm MetaG Olavius vacuus BAHAMAS.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2027
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Germany: Marburg
• Coordinates
  • Lat. (^o): 50.8
  • Long. (^o): 8.81

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000087	Metagenome	2460	Y
F000160	Metagenome	1850	Y
F013496	Metagenome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049105_11009671	F013496	N/A	MQGRVYNNGKIANVEELRQRIVDEWERLDQHIINGAVKEWHKRLRACAAAEGGQFEHEL*
Ga0049105_11009673	F000160	N/A	MEIGRFAFLRPSLGVLGATYDDHLRLIGKRVVDFLLALIGLFSLGVTAEELRAIIG*
Ga0049105_11009674	F000087	AGG	MPYNFVPDSFHTGVKAETLRAKIDRKSAISHQRGQFDQKFQVQGVAPHQLFLHD*