NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049105_1001409

Scaffold Ga0049105_1001409


Overview

Basic Information
Taxon OID3300004630 Open in IMG/M
Scaffold IDGa0049105_1001409 Open in IMG/M
Source Dataset NameWorm MetaG Olavius vacuus BAHAMAS.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10605
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (28.57%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameGermany: Marburg
CoordinatesLat. (o)50.8Long. (o)8.81Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100531Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0049105_10014092F100531GGAVWGVLQQRVYRSRIRDVDHLKQRLIEEWLCFDQNINDRAVRQWCVRLRTCVRANGGHFEHKL*

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