Scaffold Ga0068958_1016400

Overview

Basic Information

• Taxon OID: 3300004609
• Scaffold ID: Ga0068958_1016400
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 50 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 583
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042778	Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068958_10164001	F042778	N/A	SK*SSDQPNPPPACTALSYATGSAGRFACLLPANRFCRSTDQSFQTRRSLFSRSGPDARADLLLTCNDHRFRGSHSRVKAPGLSLRISTSRFPCPFGLSAPLPDPVRPGLRPLHCFWPVAASPASHTYVSSSLHSPPGLLPPSGSKRSTGLAAHRPALRTRPMPFAPHSRCLSLVSRLRIIVPGPLRFRRLAV