Scaffold Ga0066504_139722

Overview

Basic Information

• Taxon OID: 3300004573
• Scaffold ID: Ga0066504_139722
• Source Dataset Name: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 22_HOW5 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 596
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Citrobacter → Citrobacter amalonaticus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Source Dataset Sampling Location

• Location Name: USA: Lake Washington, Seattle, Washington
• Coordinates
  • Lat. (^o): 48.3807
  • Long. (^o): -122.1599

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054591	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066504_1397221	F054591	N/A	LLAVVVLIALVSNAYAGDFNATVSYDHNSAVSYANSHCGTNGEWLCAEFVAHALHAGGEFPGVSDYGNYNGYNLRLVSDLHKALLKAGWTASSSGNWCGSAGQVLIYNLNGDPNAHAALAIGNCLLDQHNPSRCGTAANWGTNIVLKK*