Scaffold Ga0069718_16313370

Overview

Basic Information

• Taxon OID: 3300004481
• Scaffold ID: Ga0069718_16313370
• Source Dataset Name: Combined Assembly of Gp0112041, Gp0112042, Gp0112043
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The National High-throughput DNA Sequencing Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1293
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location

• Location Name: Copenhagen, Denmark
• Coordinates
  • Lat. (^o): 55.685937
  • Long. (^o): 12.574205

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037206	Metagenome	168	Y
F044373	Metagenome / Metatranscriptome	154	Y
F045069	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_163133701	F045069	AGGAG	MRYLLLLLAAPALAAEPGYLTYDDVHVQTVLTQDRPSWCHGMKMAFDIDGLNRAYYGCWAGSQGFVHIEMLDGGKRVIPMAKFSKPKEATK*
Ga0069718_163133704	F037206	GGGGG	VKCQHCGSKTYVVNTAQQPGGIRRQRKCDSCKNNAYSAEVWIAGNVQVGKSIYTNDEVALIKKKGVDVRRANEDRRKDDAS*
Ga0069718_163133705	F044373	AGGAGG	MLRDGYFIKEEPPKIGAHYTPQFYQKPATPEERFVQDIMLGARPYDESPMVKFLGRLLSV