Scaffold Ga0069718_16292426

Overview

Basic Information

• Taxon OID: 3300004481
• Scaffold ID: Ga0069718_16292426
• Source Dataset Name: Combined Assembly of Gp0112041, Gp0112042, Gp0112043
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The National High-throughput DNA Sequencing Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4084
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location

• Location Name: Copenhagen, Denmark
• Coordinates
  • Lat. (^o): 55.685937
  • Long. (^o): 12.574205

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001968	Metagenome / Metatranscriptome	610	Y
F015704	Metagenome / Metatranscriptome	252	Y
F021760	Metagenome / Metatranscriptome	217	Y
F050990	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_1629242610	F021760	GGA	MCGPAFDYTFEDFLNDASPEEWAEWEQKAAELELPVDYYVQEFV*
Ga0069718_162924262	F015704	AGGA	MTYPVFRDLIEACTDPSNGTIRWSTACQAAKDHGLWDDFRTDYGMTASFGGVDAGEFLVWLGY*
Ga0069718_162924267	F050990	N/A	MNPDTLNFTGDAVTYLGLIGVTSTLIILVTVFRSYFNSPLRK*
Ga0069718_162924268	F001968	GAG	MFDELWSEIADSQGEIFDLDIPELKDEKFDVNEYLNANYDY*