Scaffold Ga0069718

Basic Information
Taxon OID	3300004481 Open in IMG/M
Scaffold ID	Ga0069718_16233874 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0112041, Gp0112042, Gp0112043
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	The National High-throughput DNA Sequencing Centre
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004481 Open in IMG/M

Scaffold ID

Ga0069718_16233874 Open in IMG/M

Source Dataset Name

Combined Assembly of Gp0112041, Gp0112042, Gp0112043

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

The National High-throughput DNA Sequencing Centre

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41864
Total Scaffold Genes	71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (38.03%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

41864

Total Scaffold Genes

71 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (38.03%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location
Location Name	Copenhagen, Denmark
Coordinates	Lat. (^o)	55.685937	Long. (^o)	12.574205	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Copenhagen, Denmark

Coordinates

Lat. (^o)

55.685937

Long. (^o)

12.574205

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F003661	Metagenome / Metatranscriptome	474	Y
F036214	Metagenome	170	Y
F038601	Metagenome / Metatranscriptome	165	Y
F082606	Metagenome	113	N
F097251	Metagenome / Metatranscriptome	104	N
F104787	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_1623387415	F097251	N/A	MQTTMIILTDSQIVELNNRIGQIQRLIESAQVIKSGGAAQPKAVTEVVETPSIVTKRRKAKRKRGALNEQKVAEIKARLAAGGESAQKIADDYGVHFTTVNLIKYGKTWKNVQASA*
Ga0069718_1623387416	F036214	N/A	MDNEAWDWMTLKPDPTSAFNVEKEARRLENTPNAGPIAAQLYRAWNMQQTLLQQATNRIAALELQLMKTQADA*
Ga0069718_1623387418	F082606	N/A	MSLVVLTAQCSGMVAPVIPLSQKTYKMSPNSRGVRAERDLWRFHPGMPCYVKGWPQVEATVISKVEGCSWPTYIVQSFATGANYQISQLYLSKRPIEQR*
Ga0069718_162338742	F038601	GAG	MKLFAPESKGMFVWQVADPKSRAVSYFTTSSRQPPNDACYGHPMGKYDDQGLYLTFCPNVGADDPKSALAARYVLHPMAAAERDRSEKERLWRQI*
Ga0069718_1623387431	F003661	AGGA	MDPTTAAVVAIVIAASSEIISLLPIKENGWIQLLVKALKVVFPKR*
Ga0069718_1623387432	F002317	N/A	MDNHEEVYAAPPEQPNPFNQAVPALLTAAVIGLGGLFMQVAKLDQSVGTVAADIQELKNDSKERLSDLETRVRHIEMTVGSRK*
Ga0069718_162338744	F104787	N/A	MKKAFDTTEVISLLRRGIAAKHWTLQDLDTPSRGWVITMEDAKRIPGFTPPTYRNPLRDESTATERVEVVSPRDFAVVEATPDPVQRGSAPVLPPTNGPVAESLSDAGVQGQEGCVGDEAHYGDQAHLGTTGEGGTQGVGGFSDDW*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0069718_16233874

Overview

Ecosystem & Geography

Associated Families

Sequences