Scaffold Ga0069718_16011454

Overview

Basic Information

• Taxon OID: 3300004481
• Scaffold ID: Ga0069718_16011454
• Source Dataset Name: Combined Assembly of Gp0112041, Gp0112042, Gp0112043
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The National High-throughput DNA Sequencing Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40546
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location

• Location Name: Copenhagen, Denmark
• Coordinates
  • Lat. (^o): 55.685937
  • Long. (^o): 12.574205

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010762	Metagenome	299	Y
F015082	Metagenome / Metatranscriptome	257	Y
F021761	Metagenome / Metatranscriptome	217	Y
F025689	Metagenome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_1601145425	F021761	N/A	MITNPWINRISALLLLCVIYAAGYSGGRDQAVQAYHNHPACNTNLKP*
Ga0069718_1601145426	F015082	N/A	MSESDIYWTFVTASKYAGSFYQAMGNAGLAADPNNKRRILQAFPEMVATYGTASRLHQTMRSGIAA*
Ga0069718_1601145432	F010762	AGGAGG	MNQATLEIAFKEWWEASYKRPPNPQAVMTHVAFAEHMLRLMELMQDD*
Ga0069718_1601145438	F025689	N/A	MIPLVHTMEAQFHGAANASALRELHKRGDMNGLLEYALLLAEAEASQRSQIHWLTQEAISSCGSIQAWHLDAARELLGG*