NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0069718_15906957

Scaffold Ga0069718_15906957


Overview

Basic Information
Taxon OID3300004481 Open in IMG/M
Scaffold IDGa0069718_15906957 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0112041, Gp0112042, Gp0112043
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe National High-throughput DNA Sequencing Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1960
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location
Location NameCopenhagen, Denmark
CoordinatesLat. (o)55.685937Long. (o)12.574205Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F008081Metagenome / Metatranscriptome339Y
F036704Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0069718_159069571F001775N/AMDNQEVKIAAIFFLIGVVVSVLLFPKREFETIYKTEIKTETDTLFVTSTDTIYVPKNKIKTEVLRDTILIDFKPQISLFETTFPFEHGSTKVSGEVLGEVLKMTAINDYTIPVVTNTITETKTETIIKKSKGIYLGAGVNSMLKPSAKVSILDNNYLFEYQYSPMDGVHHVGVSKKLF*
Ga0069718_159069572F036704N/AMWLEIDVMLSGSSMDWEELGLEVKHEFVRRMVRLQDIAYVQELVNDIQIIIFYDKSSCFVRGSYQEIRDEILHLDQEEDDL*
Ga0069718_159069575F008081N/AMQESEIINPFGYGNASRVIDENRKPADWWAEFLEINLEVVENEFYVLFSNGSLVKKGRSKFRTSQYLLGDRFKSFRQNYERP*
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