Scaffold Ga0069718_15257843

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0069718_15257843

Scaffold Ga0069718_15257843

Overview

Basic Information
Taxon OID	3300004481 Open in IMG/M
Scaffold ID	Ga0069718_15257843 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0112041, Gp0112042, Gp0112043
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	The National High-throughput DNA Sequencing Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1564
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location
Location Name	Copenhagen, Denmark
Coordinates	Lat. (^o)	55.685937	Long. (^o)	12.574205	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083706	Metagenome / Metatranscriptome	112	Y
F093483	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_152578432	F093483	AGGCGG	VTIEKTYAGALVVSALVNWEGVKWLESATYYGYTVRDAKASFKESCARLNYKIERE*
Ga0069718_152578434	F083706	AGGAGG	VENVTPRGWFMLGVCAGLAVWGLWEVAAHLFWNGSGWEWCEDLATCDL*

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