Basic Information | |
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Taxon OID | 3300004481 Open in IMG/M |
Scaffold ID | Ga0069718_15083456 Open in IMG/M |
Source Dataset Name | Combined Assembly of Gp0112041, Gp0112042, Gp0112043 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | The National High-throughput DNA Sequencing Centre |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3136 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark |
Source Dataset Sampling Location | ||||||||
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Location Name | Copenhagen, Denmark | |||||||
Coordinates | Lat. (o) | 55.685937 | Long. (o) | 12.574205 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011668 | Metagenome / Metatranscriptome | 288 | Y |
F025459 | Metagenome | 201 | N |
F048162 | Metagenome / Metatranscriptome | 148 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0069718_150834564 | F025459 | AGGAGG | MKMTLEYDETERYEHEVACKALDILILVDDIDQELRSALKHECGEFAKLDVETMEAVRAWIWEQRSDRNIPELK* |
Ga0069718_150834565 | F048162 | N/A | LKKRKQPTVESERTEALAEAKRILSEHYDCGLTIVSWEQGGETHHGEFVFGNKYAVEGLASDSFSILFPDLEEEEEEDEA* |
Ga0069718_150834567 | F011668 | N/A | MSAKQIALWMIFLSFAFLGMAFLTSCAGYGNPQICLRSQYGTLCYELPDIKGLKK* |
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