Scaffold Ga0069718_14618431

Overview

Basic Information

• Taxon OID: 3300004481
• Scaffold ID: Ga0069718_14618431
• Source Dataset Name: Combined Assembly of Gp0112041, Gp0112042, Gp0112043
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The National High-throughput DNA Sequencing Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3307
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location

• Location Name: Copenhagen, Denmark
• Coordinates
  • Lat. (^o): 55.685937
  • Long. (^o): 12.574205

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F009402	Metagenome	318	Y
F010915	Metagenome / Metatranscriptome	297	Y
F033034	Metagenome / Metatranscriptome	178	Y
F037694	Metagenome / Metatranscriptome	167	N
F045702	Metagenome	152	N
F068462	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_146184313	F009402	N/A	MKKLDKEFESSSFKYKQIHRENMFAIYERHHISSEKKHFEAIKIQSHNGYEIAGNKIPPSECYPTSNSWGSHGYTCLDKKAAYNRLDRMMKEDVRNKEIANKKAERKKAK*
Ga0069718_146184314	F068462	N/A	MSDIDYTWKVNSVKCYKDINGYQDYVYQTYWNCAAATSGTAGAYDASFAGATPLGTGAASTSGYAFKPFSELTQDDVLNWIWATLPSGAGKEYYEQKVSGEIVYKMNYQTEEPALPWNPPVPPPSGTV*
Ga0069718_146184315	F006546	N/A	MKWKYIGNRAGDATKGEQYIVGADELTENYMKSQPYPQYVLVYVVQPPSPRKNFMSMKVGDIVKICNPYYDMHHYSHPGFIPVKE*
Ga0069718_146184316	F037694	N/A	MLNKDQAFLINEFIRKNATRNLWEVSDKLYTLISEIKKIEELPQNNETEIAAA*
Ga0069718_146184317	F010915	AGAAG	MKQKLPPHNMIVIHQVGLDLYAVSYVKYVDHDVQQCIKYNLSAEDVAQFLGNN*
Ga0069718_146184318	F033034	N/A	MKSVKLTKKAQDIVNQIMSADAVDIDHGPVGERVYYGHSFLSGEGLEFNVNVDGEIGEMVIINETLNEATIVDGIIQIDADHIKDNDYGDMTITLYKLSKIAAV*
Ga0069718_146184319	F045702	N/A	MTITQTLNRTAGRFTTLVVNKGAANNTYCAQISSATEKTVRFYDVNAEANRVVPTASVVYARSGKVQFRKPRK*