Scaffold Ga0069718_13540000

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0069718_13540000

Scaffold Ga0069718_13540000

Overview

Basic Information
Taxon OID	3300004481 Open in IMG/M
Scaffold ID	Ga0069718_13540000 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0112041, Gp0112042, Gp0112043
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	The National High-throughput DNA Sequencing Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	570
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location
Location Name	Copenhagen, Denmark
Coordinates	Lat. (^o)	55.685937	Long. (^o)	12.574205	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009953	Metagenome / Metatranscriptome	310	Y
F017272	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_135400001	F017272	GGAG	MTEFDVAAVDLSGILNKPAEDKAKQLPDPKTFHLLCVVPEAMQEYADSEVGLIKSSQAMHFEEVLTP
Ga0069718_135400002	F009953	AGGAG	LNDYKLLAHVVKEIEKLKQEREAYVAAGRADHIEEYRQVCGVIRGLNLAENIINELVQKLEKSDD*

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